Cat - Abyssinian (Felis_catus_9.0)

Cat - Abyssinian assembly and gene annotation

Assembly

The Felis_catus_9.0 assembly was submitted by Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine and last updated on 2019-11-21. The assembly is on the chromosome level, consisting of 4908 contigs assembled into 4524 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 41915695 while the scaffold N50 is 83967707.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyFelis_catus_9.0, INSDC Assembly GCA_000181335.4, Nov 2017
Base Pairs2,521,863,845
Golden Path Length2,521,863,845
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedJan 2018
Genebuild releasedJun 2018
Genebuild last updated/patchedSep 2020
Database version114.9

Gene counts

Coding genes19,588
Non coding genes9,468
Small non coding genes2,622
Long non coding genes6,818
Misc non coding genes28
Pseudogenes494
Gene transcripts54,456

Other

Genscan gene predictions53,502
Short Variants3,259,957