Three-spined sticklebacki - Freshwater BOT assembly and gene annotation

Name: Ensembl Three-spined sticklebacki - Freshwater BOT Gene Set
Creator: Ensembl
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	BOT, INSDC Assembly GCA_006229185.1, Jun 2019
Base Pairs	427,295,814
Golden Path Length	427,295,814
Annotation provider	Ensembl
Annotation method	Full genebuild
Genebuild started	Oct 2020
Genebuild released	Jan 2021
Genebuild last updated/patched	Oct 2020
Database version	112.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,658
Non coding genes	619
Small non coding genes	277
Long non coding genes	339
Misc non coding genes	3
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	267
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	54,825

Other

Genscan gene predictions

37,843

Three-spined sticklebacki - Freshwater BOT assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

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Three-spined sticklebacki - Freshwater BOT assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

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