Mouse C3H/HeJ assembly and gene annotation

Name: Ensembl Mouse C3H/HeJ Gene Set
Creator: UCSC computational genomics laboratory
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	C3H_HeJ_v1, INSDC Assembly GCA_001632575.1, May 2016
Base Pairs	2,701,115,015
Golden Path Length	2,701,115,015
Annotation provider	UCSC computational genomics laboratory
Annotation method	External annotation import
Genebuild started	Jul 2016
Genebuild released	Oct 2016
Genebuild last updated/patched	Jan 2018
Database version	113.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,580
Non coding genes	11,064
Small non coding genes	4,588
Long non coding genes	5,926
Misc non coding genes	550
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	6,258
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	101,710

Other

Genscan gene predictions

50,133

Mouse C3H/HeJ assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

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Mouse C3H/HeJ assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

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