Mouse CAST/EiJ assembly and gene annotation

Name: Ensembl Mouse CAST/EiJ Gene Set
Creator: UCSC computational genomics laboratory
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	CAST_EiJ_v1, INSDC Assembly GCA_001624445.1, Apr 2016
Base Pairs	2,653,974,351
Golden Path Length	2,653,974,351
Annotation provider	UCSC computational genomics laboratory
Annotation method	External annotation import
Genebuild started	Jul 2016
Genebuild released	Oct 2016
Genebuild last updated/patched	Jan 2018
Database version	113.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,319
Non coding genes	10,849
Small non coding genes	4,448
Long non coding genes	5,853
Misc non coding genes	548
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	5,912
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	102,099

Other

Genscan gene predictions

49,277

Mouse CAST/EiJ assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

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Mouse CAST/EiJ assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

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