Mouse LP/J assembly and gene annotation

Name: Ensembl Mouse LP/J Gene Set
Creator: UCSC computational genomics laboratory
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	LP_J_v1, INSDC Assembly GCA_001632615.1, May 2016
Base Pairs	2,730,782,202
Golden Path Length	2,730,782,202
Annotation provider	UCSC computational genomics laboratory
Annotation method	External annotation import
Genebuild started	Jul 2016
Genebuild released	Oct 2016
Genebuild last updated/patched	Jan 2018
Database version	113.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,717
Non coding genes	11,093
Small non coding genes	4,602
Long non coding genes	5,942
Misc non coding genes	549
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	6,376
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	101,892

Other

Genscan gene predictions

49,699

Mouse LP/J assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Mouse LP/J assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

Follow us