Olive baboon assembly and gene annotation

The olive baboon (Papio anubis), also called the Anubis baboon, is a member of the family Cercopithecidae (Old World monkeys). The species is the most wide-ranging of all baboons, being found in 25 countries throughout Africa, extending from Mali eastward to Ethiopia and Tanzania.

Assembly

The Panubis1.0 assembly was submitted by University of California, San Francisco on October 2019. The assembly is on chromosome level, consisting of 15,213 contigs assembled into 11,145 scaffolds. From these sequences, 22 chromosomes have been built. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 1,464,978 while the scaffold N50 is 140,274,886.

Other assemblies

Gene annotation

The gene annotation process was carried out using a combination of protein-to-genome alignments, annotation mapping from a suitable reference species and RNA-seq alignments (where RNA-seq data with appropriate meta data were publicly available). For each candidate gene region, a selection process was applied to choose the most appropriate set of transcripts based on evolutionary distance, experimental evidence for the source data and quality of the alignments. Small ncRNAs were obtained using a combination of BLAST and Infernal/RNAfold. Pseudogenes were calculated by looking at genes with a large percentage of non-biological introns (introns of <10bp), where the gene was covered in repeats, or where the gene was single exon and evidence of a functional multi-exon paralog was found elsewhere in the genome.

• Detailed information on Olive baboon genebuild (PDF)

In accordance with the Fort Lauderdale Agreement , please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.