Norway rat - BN/NHsdMcwi (GRCr8)

Norway rat - BN/NHsdMcwi assembly and gene annotation

Assembly

The GRCr8 assembly was submitted by Genome Reference Consortium and last updated on 2024-01-31. The assembly is on the chromosome level, consisting of 297 contigs assembled into 77 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 64250101 while the scaffold N50 is 137014596.

Other assemblies

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyGRCr8 (Genome Reference Consortium Rat Build 8), INSDC Assembly GCA_036323735.1, Jan 2024
Base Pairs2,849,597,492
Golden Path Length2,849,597,492
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedFeb 2024
Genebuild released
Genebuild last updated/patchedMar 2024
Database version114.1

Gene counts

Coding genes22,548
Non coding genes20,365
Small non coding genes4,153
Long non coding genes16,185
Misc non coding genes27
Pseudogenes447
Gene transcripts95,472

Other

Short Variants9,574,304