Assembly
The GRCr8 assembly was submitted by Genome Reference Consortium and last updated on 2024-01-31. The assembly is on the chromosome level, consisting of 297 contigs assembled into 77 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 64250101 while the scaffold N50 is 137014596.
Other assemblies
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
Assembly | GRCr8 (Genome Reference Consortium Rat Build 8), INSDC Assembly GCA_036323735.1, Jan 2024 |
Base Pairs | 2,849,597,492 |
Golden Path Length | 2,849,597,492 |
Annotation provider | Ensembl |
Annotation method | Full genebuild |
Genebuild started | Feb 2024 |
Genebuild released | |
Genebuild last updated/patched | Mar 2024 |
Database version | 114.1 |
Gene counts
Coding genes | 22,548 |
Non coding genes | 20,365 |
Small non coding genes | 4,153 |
Long non coding genes | 16,185 |
Misc non coding genes | 27 |
Pseudogenes | 447 |
Gene transcripts | 95,472 |
Other
Short Variants | 9,574,304 |