Atlantic salmon - European origin ALTA assembly and gene annotation

Name: Ensembl Atlantic salmon - European origin ALTA Gene Set
Creator: Ensembl
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	Ssal_ALTA, INSDC Assembly GCA_931346935.2, May 2022
Base Pairs	2,621,787,693
Golden Path Length	2,621,787,693
Annotation provider	Ensembl
Annotation method	Full genebuild
Genebuild started	Jun 2022
Genebuild released	Oct 2023
Genebuild last updated/patched	Oct 2022
Database version	115.2

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	42,434
Non coding genes	2,495
Small non coding genes	2,388
Long non coding genes	40
Misc non coding genes	67
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	850
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	73,501

Atlantic salmon - European origin ALTA assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

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Atlantic salmon - European origin ALTA assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

About Us

Get help

Our sister sites

Follow us