Horse vs Pig Synteny results
The syntenic regions between Horse (Equus caballus, EquCab3.0) and Pig (Sus scrofa, Sscrofa11.1) were extracted from their pairwise alignment in Ensembl release 95. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 234 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Horse |
Uncovered: 134,890,399 out of 2,506,966,135 |
Uncovered: 901,171 out of 37,559,221 |
| Pig |
Uncovered: 120,900,764 out of 2,501,912,388 |
Uncovered: 1,158,178 out of 35,828,571 |