Mouse vs Algerian mouse Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Algerian mouse (Mus spretus, SPRET_EiJ_v1) were extracted from their pairwise alignment in Ensembl release 103. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 127 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 181,606,063 out of 2,728,222,451 |
Uncovered: 472,329 out of 36,555,494 |
| Algerian mouse |
Uncovered: 33,506,550 out of 2,625,571,169 |
Uncovered: 1,576 out of 33,001,570 |