23 pig breeds EPO-Extended
This alignment has been generated in Ensembl release 115 and is composed of 13,000 blocks (up to 994,589 bp long).
API access
| Species | Assembly | Genome length (bp) | Genome coverage (bp) | Genome coverage (%) | Coding exon length (bp) | Coding exon coverage (bp) | Coding exon coverage (%) |
|---|---|---|---|---|---|---|---|
| Cattle (Bos taurus) | ARS-UCD2.0 | 2,770,686,120 | 2,567,816,533 | 92.68 | 35,918,484 | 34,325,877 | 95.57 |
| Sheep (Ovis aries) | ARS-UI_Ramb_v3.0 | 2,654,063,983 | 2,531,808,854 | 95.39 | 34,989,924 | 33,750,056 | 96.46 |
| Pig - Wuzhishan (Sus scrofa) | minipig_v1.0 | 2,508,912,457 | 2,316,659,250 | 92.34 | 32,216,998 | 30,560,250 | 94.86 |
| Pig - Berkshire (Sus scrofa) | Berkshire_pig_v1 | 2,434,706,773 | 2,315,517,048 | 95.10 | 34,511,197 | 33,473,657 | 96.99 |
| Pig - Tibetan (Sus scrofa) | Tibetan_Pig_v2 | 2,437,742,524 | 2,262,258,858 | 92.80 | 33,242,148 | 31,885,683 | 95.92 |
| Pig - Largewhite (Sus scrofa) | Large_White_v1 | 2,457,907,103 | 2,329,112,940 | 94.76 | 34,666,066 | 33,653,971 | 97.08 |
| Pig - Hampshire (Sus scrofa) | Hampshire_pig_v1 | 2,437,109,612 | 2,323,593,182 | 95.34 | 34,573,096 | 33,516,528 | 96.94 |
| Pig - Ossabaw miniature (Sus scrofa) | ASM2471841v1 | 2,455,681,563 | 2,338,042,151 | 95.21 | 35,510,875 | 33,975,391 | 95.68 |
| Pig USMARC (Sus scrofa) | USMARCv1.0 | 2,755,438,035 | 2,328,759,856 | 84.52 | 35,166,034 | 33,204,929 | 94.42 |
| Pig - Duroc (Sus scrofa) | Ninghe_Sus_1 | 2,458,257,385 | 2,344,887,640 | 95.39 | 31,082,983 | 30,440,445 | 97.93 |
| Pig (Sus scrofa) | Sscrofa11.1 | 2,501,912,388 | 2,371,850,611 | 94.80 | 35,448,596 | 34,013,025 | 95.95 |
| Pig - NIHS-2020 (Sus scrofa) | ASM1855540v1 | 2,598,860,052 | 2,342,612,751 | 90.14 | 36,548,658 | 34,536,486 | 94.49 |
| Pig - Pietrain (Sus scrofa) | Pietrain_pig_v1 | 2,438,316,299 | 2,320,565,544 | 95.17 | 34,368,936 | 33,373,838 | 97.10 |
| Pig - PB115 (Sus scrofa) | CAU-K | 2,444,985,074 | 2,331,139,835 | 95.34 | 35,284,272 | 33,871,226 | 96.00 |
| Pig - euw1 (european wild boar) (Sus scrofa) | ASM2165605v1 | 2,457,990,317 | 2,335,677,589 | 95.02 | 32,847,998 | 31,674,885 | 96.43 |
| Pig - Landrace (Sus scrofa) | Landrace_pig_v1 | 2,440,981,886 | 2,319,846,280 | 95.04 | 34,646,469 | 33,610,088 | 97.01 |
| Pig - Rongchang (Sus scrofa) | Rongchang_pig_v1 | 2,459,027,728 | 2,320,866,156 | 94.38 | 34,688,475 | 33,744,578 | 97.28 |
| Pig - Ningxiang (Sus scrofa domesticus) | ASM2056790v1 | 2,440,961,843 | 2,336,562,812 | 95.72 | 35,175,308 | 33,885,302 | 96.33 |
| Pig - Bamei (Sus scrofa) | Bamei_pig_v1 | 2,460,755,741 | 2,317,376,451 | 94.17 | 34,436,299 | 33,413,211 | 97.03 |
| Pig - Jinhua (Sus scrofa) | Jinhua_pig_v1 | 2,453,702,738 | 2,317,578,053 | 94.45 | 34,359,345 | 33,352,901 | 97.07 |
| Pig - Bama miniature (Sus scrofa) | ASM764409v1 | 2,491,069,675 | 2,325,575,583 | 93.36 | 35,806,036 | 34,150,592 | 95.38 |
| Pig - Meishan (Sus scrofa) | Meishan_pig_v1 | 2,467,495,771 | 2,316,270,762 | 93.87 | 34,405,547 | 33,377,868 | 97.01 |
| Horse (Equus caballus) | EquCab3.0 | 2,506,966,135 | 2,293,760,451 | 91.50 | 38,317,516 | 36,007,462 | 93.97 |
Block size distribution
| Size range | All 13,000 alignment blocks | |
|---|---|---|
| # blocks | Total size (incl. gaps) | |
| 10 bp - 100 bp | 1 |
44.0 bp |
| 100 bp - 1 kb | 25 |
12.3 kb |
| 1 kb - 10 kb | 255 |
1.4 Mb |
| 10 kb - 100 kb | 5,578 |
251.4 Mb |
| 100 kb - 1 Mb | 4,215 |
1.6 Gb |
| 1 Mb - 10 Mb | 2,926 |
2.9 Gb |