Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Huchen (Hucho hucho)1
2
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Mammals (Mammalia)21
5121
3435243.938960.94.2
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Degu (Octodon degus)1
2
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Shrew (Sorex araneus)6
17
262.8111.02.8
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Olive baboon (Papio anubis)2
5
232.5111.02.5
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Human (Homo sapiens)61
146
282.4111.02.4
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4