Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
74707
2471324980.527224.13.0
Bilateral animals (Bilateria)20
5060
2984253.0214697.51.8
Chordates (Chordata)78
99560
5543201276.4516176.63.7
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
Vertebrates (Vertebrata)137
41071
22615299.8215771.36.8
Jawed vertebrates (Gnathostomata)134
45259
189773337.8516186.12.9
Bony vertebrates (Euteleostomi)230
55608
26176241.8217260.46.7
Lobe-finned fish (Sarcopterygii)43
11773
2654273.829343.615.2
Tetrapods (Tetrapoda)39
8434
2399216.3211455.88.8
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Amniotes (Amniota)148
27373
22326185.0210540.14.1
Mammals (Mammalia)11
1487
4354135.247745.32.7
Platypus (Ornithorhynchus anatinus)24
5912
2395246.3111.0246.3
Marsupials and Placental mammals (Theria)78
8557
2392109.727930.95.3
Placentals (Eutheria)8520
74826
217398.82874.61.3
Sperm whale (Physeter catodon)3
7
232.3111.02.3
Shrew (Sorex araneus)6
17
262.8111.02.8
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Human (Homo sapiens)78
180
282.3111.02.3
Hyrax (Procavia capensis)16
51
273.2111.03.2
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)24
70
2102.9111.02.9
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)13
34
292.6111.02.6
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Leopard (Panthera pardus)1
249
249249249.0111.0249.0
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Vervet-AGM (Chlorocebus sabaeus)20
50
262.5111.02.5
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Gibbon (Nomascus leucogenys)11
22
222.0111.02.0
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Macaque (Macaca mulatta)1
2
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Bonobo (Pan paniscus)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Chinese hamster CHOK1GS (Cricetulus griseus CHOK1GS_HDv1)1
2
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Pika (Ochotona princeps)65
150
272.3111.02.3
Degu (Octodon degus)1
2
222.0111.02.0
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Rat (Rattus norvegicus strain BN/NHsdMcwi)2
4
222.0111.02.0
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Cat (Felis catus)1
2
222.0111.02.0
Cow (Bos taurus reference breed)2
4
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Guinea Pig (Cavia porcellus)2
615
221394307.5111.0307.5
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Domestic yak (Bos grunniens)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Horse (Equus caballus breed thoroughbred)11
31
252.8111.02.8
Mouse (Mus musculus reference (CL57BL6) strain)156
496
2273.2111.03.2
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Mouse Lemur (Microcebus murinus)4
8
222.0111.02.0
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Olive baboon (Papio anubis)2
5
232.5111.02.5
Marsupials (Marsupialia)54
561
239110.4243.12.8
Diprotodontia5
10
222.0222.01.0
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Reptiles and birds (Sauria)265
801
2123.02123.01.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Australian saltwater crocodile (Crocodylus porosus)2
400
25375200.0111.0200.0
Three-toed box turtle (Terrapene carolina triunguis)7
14
222.0111.02.0
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Common wall lizard (Podarcis muralis)2
46
24423.0111.023.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Coelacanth (Latimeria chalumnae)4
867
2399216.8111.0216.8
Bony fishes (Actinopterygii)1
4
444.0333.01.3
Ray-finned fishes (Neopterygii)4
1135
219330283.832815.537.8
Osteoglossocephalai6
1609
8361268.252814.023.1
Teleost fishes (Clupeocephala)396
14716
239937.22355.012.7
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Turbot (Scophthalmus maximus)40
11134
13400278.4111.0278.4
Zebra mbuna (Maylandia zebra)5
18
273.6111.03.6
Huchen (Hucho hucho)1
2
222.0111.02.0
Atlantic cod (Gadus morhua)16
57
293.6111.03.6
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Coho salmon (Oncorhynchus kisutch)9
1119
2395124.3111.0124.3
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)5
58
24811.6111.011.6
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Lumpfish (Cyclopterus lumpus)4
407
2355101.8111.0101.8
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Atlantic salmon (Salmo salar)634
3746
23845.9111.05.9
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Rainbow trout (Oncorhynchus mykiss)30
7021
2389234.0111.0234.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Zebrafish (Danio rerio)40
1468
238636.7111.036.7
Goldfish (Carassius auratus)4
1398
232398349.5111.0349.5
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Spotted gar (Lepisosteus oculatus)9
1658
2379184.2111.0184.2
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lamprey (Petromyzon marinus)15
758
239550.5111.050.5
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)104
624
2296.0111.06.0
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4