Phylogenetic summary of ncRNA families

This page provides a summary of the Ensembl phylogenetic analysis of ncRNA families. The following views are available:

Size of gene trees (per root node)

Species# Trees% Trees# Genes% GenesMin # genesMax # genesAverage # genesMin # speciesMax # speciesAverage # speciesAverage # genes per species
Animals and Fungi (Opisthokonta)15
141107
2924279407.1211227.62.6
Saccharomyces cerevisiae (Saccharomyces cerevisiae S288C)44
280
2216.4111.06.4
Bilateral animals (Bilateria)25
8374
21567335.02176121.81.5
Chordates (Chordata)87
182209
5874472094.4519299.72.8
Ciona sea squirts (Ciona)3
6
222.0222.01.0
C.intestinalis (Ciona intestinalis)12
34
252.8111.02.8
C.savignyi (Ciona savignyi)4
25
2186.2111.06.2
Vertebrates (Vertebrata)201
69326
25023344.9219185.34.5
Jawed vertebrates (Gnathostomata)166
81328
2922448489.911193103.92.6
Elephant shark (Callorhinchus milii)1
2
222.0111.02.0
Bony vertebrates (Euteleostomi)411
112952
26341274.8218075.65.6
Bony fishes (Actinopterygii)5
583
2388116.626120.410.9
Ray-finned fishes (Neopterygii)9
2428
35395269.836432.922.0
Spotted gar (Lepisosteus oculatus)6
1353
2390225.5111.0225.5
Osteoglossocephalai10
2688
11379268.835126.524.7
Teleost fishes (Clupeocephala)507
22469
239844.32546.710.2
Coho salmon (Oncorhynchus kisutch)7
514
221473.4111.073.4
Tongue sole (Cynoglossus semilaevis)1
2
222.0111.02.0
Pike-perch (Sander lucioperca)4
21
2125.2111.05.2
Lumpfish (Cyclopterus lumpus)4
446
2379111.5111.0111.5
Atlantic herring (Clupea harengus reference strain)2
4
222.0111.02.0
Turquoise killifish (Nothobranchius furzeri)1
2
222.0111.02.0
Chinook salmon (Oncorhynchus tshawytscha reference strain)1
396
396396396.0111.0396.0
Turbot (Scophthalmus maximus)41
10848
51390264.6111.0264.6
Atlantic salmon (Salmo salar)632
3989
23806.3111.06.3
Denticle herring (Denticeps clupeoides reference strain)28
7695
26398274.8111.0274.8
Clown anemonefish (Amphiprion ocellaris ecotype Okinawa)2
5
232.5111.02.5
Siamese fighting fish (Betta splendens)1
2
222.0111.02.0
Amazon molly (Poecilia formosa)12
25
232.1111.02.1
Channel catfish (Ictalurus punctatus strain USDA103-YYmale1)10
1139
2386113.9111.0113.9
Pinecone soldierfish (Myripristis murdjan)1
2
222.0111.02.0
Goldfish (Carassius auratus)4
1379
246388344.8111.0344.8
Fugu (Takifugu rubripes)2
6
333.0111.03.0
Northern pike (Esox lucius reference strain)1
395
395395395.0111.0395.0
Zebrafish (Danio rerio)39
1337
238034.3111.034.3
Huchen (Hucho hucho)1
2
222.0111.02.0
Bicolor damselfish (Stegastes partitus)2
4
222.0111.02.0
Tetraodon (Tetraodon nigroviridis)13
57
2174.4111.04.4
Channel bull blenny (Cottoperca gobio)2
387
2385193.5111.0193.5
Zig-zag eel (Mastacembelus armatus)1
2
222.0111.02.0
Yellowtail amberjack (Seriola lalandi dorsalis)10
20
222.0111.02.0
Nile tilapia (Oreochromis niloticus)28
137
2234.9111.04.9
Common carp (Cyprinus carpio carpio)2
52
25026.0111.026.0
Indian medaka (Oryzias melastigma)3
7
232.3111.02.3
Atlantic cod (Gadus morhua)19
750
239739.5111.039.5
Tiger tail seahorse (Hippocampus comes)3
6
222.0111.02.0
Rainbow trout (Oncorhynchus mykiss)32
7808
2396244.0111.0244.0
Japanese medaka HdrR (Oryzias latipes)10
70
2187.0111.07.0
Zebra mbuna (Maylandia zebra)1
5
555.0111.05.0
Ballan wrasse (Labrus bergylta)1
2
222.0111.02.0
Orange clownfish (Amphiprion percula)1
2
222.0111.02.0
Brown trout (Salmo trutta)4
14
273.5111.03.5
Asian bonytongue (Scleropages formosus)1
2
222.0111.02.0
Reedfish (Erpetoichthys calabaricus)2
4
222.0111.02.0
Lobe-finned fish (Sarcopterygii)60
17250
21452287.5211864.47.1
Coelacanth (Latimeria chalumnae)2
235
2233117.5111.0117.5
Tetrapods (Tetrapoda)41
10227
2398249.4212281.56.2
Tropical clawed frog (Xenopus tropicalis)6
98
25016.3111.016.3
Leishan spiny toad (Leptobrachium leishanense)2
4
222.0111.02.0
Amniotes (Amniota)288
69488
23200241.3211564.03.5
Mammals (Mammalia)21
5121
3435243.938960.94.2
Marsupials and Placental mammals (Theria)83
10461
2398126.029243.92.9
Marsupials (Marsupialia)56
1259
235522.5243.15.8
Diprotodontia5
10
222.0222.01.0
Common wombat (Vombatus ursinus)38
97
282.6111.02.6
Wallaby (Notamacropus eugenii)2
68
224634.0111.034.0
Opossum (Monodelphis domestica)18
55
283.1111.03.1
Tasmanian devil (Sarcophilus harrisii)1
2
222.0111.02.0
Placentals (Eutheria)11699
148860
2339712.72884.61.4
Degu (Octodon degus)1
2
222.0111.02.0
Microbat (Myotis lucifugus)8
20
252.5111.02.5
Human (Homo sapiens)61
146
282.4111.02.4
Donkey (Equus asinus reference breed)2
4
222.0111.02.0
Drill (Mandrillus leucophaeus)7
14
222.0111.02.0
Greater bamboo lemur (Prolemur simus)2
4
222.0111.02.0
Cattle (Bos taurus reference breed)8
21
262.6111.02.6
Golden snub-nosed monkey (Rhinopithecus roxellana)2
4
222.0111.02.0
Tree Shrew (Tupaia belangeri)12
41
2103.4111.03.4
Ferret (Mustela putorius furo)4
8
222.0111.02.0
Upper Galilee mountains blind mole rat (Nannospalax galili)2
4
222.0111.02.0
Elephant (Loxodonta africana)6
20
263.3111.03.3
Tarsier (Carlito syrichta)6
13
232.2111.02.2
Pig (Sus scrofa reference breed)5
12
232.4111.02.4
Olive baboon (Papio anubis)2
5
232.5111.02.5
Black snub-nosed monkey (Rhinopithecus bieti)3
6
222.0111.02.0
Chimpanzee (Pan troglodytes)39
93
262.4111.02.4
Mouse Lemur (Microcebus murinus)3
6
222.0111.02.0
Sperm whale (Physeter macrocephalus)3
7
232.3111.02.3
Squirrel (Ictidomys tridecemlineatus)1
2
222.0111.02.0
Giant panda (Ailuropoda melanoleuca reference isolate)4
8
222.0111.02.0
Alpaca (Vicugna pacos)7
41
2275.9111.05.9
Shrew (Sorex araneus)6
17
262.8111.02.8
Mouse (Mus musculus reference (CL57BL6) strain)107
302
2472.8111.02.8
Domestic cat (Felis catus reference breed)1
3
333.0111.03.0
Hyrax (Procavia capensis)16
51
273.2111.03.2
Dolphin (Tursiops truncatus)10
35
2103.5111.03.5
Vervet-AGM (Chlorocebus sabaeus)19
48
262.5111.02.5
Gibbon (Nomascus leucogenys)10
20
222.0111.02.0
Lesser hedgehog tenrec (Echinops telfairi)4
8
222.0111.02.0
Sooty mangabey (Cercocebus atys)4
9
232.2111.02.2
Macaque (Macaca mulatta)1
2
222.0111.02.0
Dog (Canis lupus familiaris reference breed)21
64
2103.0111.03.0
Kangaroo rat (Dipodomys ordii)1
2
222.0111.02.0
Bushbaby (Otolemur garnettii)10
20
222.0111.02.0
Western wild mouse (Mus spretus reference strain)41
128
2283.1111.03.1
Pig-tailed macaque (Macaca nemestrina)1
2
222.0111.02.0
Yarkand deer (Cervus hanglu yarkandensis)4
9
232.2111.02.2
Gorilla (Gorilla gorilla gorilla)18
40
262.2111.02.2
Horse (Equus caballus breed thoroughbred)9
22
242.4111.02.4
Ma's night monkey (Aotus nancymaae)4
8
222.0111.02.0
Eurasian red squirrel (Sciurus vulgaris)1
2
222.0111.02.0
Ryukyu mouse (Mus caroli strain CAROLI_EIJ)1
2
222.0111.02.0
Steppe mouse (Mus spicilegus)1
2
222.0111.02.0
Red fox (Vulpes vulpes)1
2
222.0111.02.0
Long-tailed chinchilla (Chinchilla lanigera)5
10
222.0111.02.0
Shrew mouse (Mus pahari strain PAHARI_EIJ)1
2
222.0111.02.0
Megabat (Pteropus vampyrus)20
80
2164.0111.04.0
Prairie vole (Microtus ochrogaster)3
6
222.0111.02.0
Siberian musk deer (Moschus moschiferus)3
6
222.0111.02.0
Golden Hamster (Mesocricetus auratus)6
12
222.0111.02.0
Sumatran orangutan (Pongo abelii)4
8
222.0111.02.0
Arabian camel (Camelus dromedarius)1
2
222.0111.02.0
Crab-eating macaque (Macaca fascicularis)1
2
222.0111.02.0
Armadillo (Dasypus novemcinctus)10
45
2154.5111.04.5
Norway rat - BN/NHsdMcwi (Rattus norvegicus reference strain)1
2
222.0111.02.0
Sloth (Choloepus hoffmanni)9
21
252.3111.02.3
Panamanian white-faced capuchin (Cebus imitator)1
2
222.0111.02.0
Hedgehog (Erinaceus europaeus)10
24
262.4111.02.4
Coquerel's sifaka (Propithecus coquereli)4
8
222.0111.02.0
Domestic yak (Bos grunniens)2
4
222.0111.02.0
Lesser Egyptian jerboa (Jaculus jaculus)1
2
222.0111.02.0
Sheep (Ovis aries reference breed)11
22
222.0111.02.0
White-tufted-ear marmoset (Callithrix jacchus)14
380
234627.1111.027.1
Hybrid - Bos Indicus (Bos indicus x Bos taurus)2
4
222.0111.02.0
Blue whale (Balaenoptera musculus)1
3
333.0111.03.0
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)2
4
222.0111.02.0
Pika (Ochotona princeps)65
150
272.3111.02.3
Dingo (Canis lupus dingo)4
12
253.0111.03.0
Platypus (Ornithorhynchus anatinus)26
5880
2392226.2111.0226.2
Reptiles and birds (Sauria)314
1962
23686.22273.41.5
Chinese softshell turtle (Pelodiscus sinensis)10
26
262.6111.02.6
Three-toed box turtle (Terrapene triunguis)4
8
222.0111.02.0
Chicken (Gallus gallus reference breed)10
64
2166.4111.06.4
Eastern brown snake (Pseudonaja textilis)2
4
222.0111.02.0
Indian cobra (Naja naja)2
4
222.0111.02.0
Common wall lizard (Podarcis muralis)1
2
222.0111.02.0
Collared flycatcher (Ficedula albicollis)2
4
222.0111.02.0
Medium ground-finch (Geospiza fortis)1
2
222.0111.02.0
Lamprey (Petromyzon marinus)15
755
239050.3111.050.3
Arthropods and nematodes (Ecdysozoa)2
4
222.0222.01.0
Drosophila melanogaster - (Fruit fly) (Drosophila melanogaster)78
425
2485.4111.05.4
Caenorhabditis elegans (Nematode, N2) (Caenorhabditis elegans strain N2)113
647
2295.7111.05.7