Cattle - Wagyu (UOA_Wagyu_1)

Cattle - Wagyu assembly and gene annotation

Assembly

The UOA_Wagyu_1 assembly was submitted by University of Adelaide and last updated on 2024-08-16. The assembly is on the chromosome level, consisting of 419 contigs assembled into 402 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 111091738 while the scaffold N50 is 114962053.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyUOA_Wagyu_1, INSDC Assembly GCA_040286185.1, Jun 2024
Base Pairs3,142,409,772
Golden Path Length3,142,409,772
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedJul 2024
Genebuild released
Genebuild last updated/patchedNov 2024
Database version115.1

Gene counts

Coding genes21,216
Non coding genes23,230
Small non coding genes9,196
Long non coding genes14,009
Misc non coding genes25
Pseudogenes316
Gene transcripts93,521