Chicken (Red Jungle fowl) (GRCg6a)

Chicken (Red Jungle fowl) assembly and gene annotation

Assembly

The GRCg6a assembly was submitted by Genome Reference Consortium and last updated on 2018-12-05. The assembly is on the chromosome level, consisting of 1402 contigs assembled into 524 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 17655422 while the scaffold N50 is 20785086.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyGRCg6a, INSDC Assembly GCA_000002315.5, Mar 2018
Base Pairs1,065,365,425
Golden Path Length1,065,365,425
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedSep 2021
Genebuild released
Genebuild last updated/patchedJan 2022
Database version116.6

Gene counts

Coding genes17,077
Non coding genes13,729
Small non coding genes1,275
Long non coding genes12,449
Misc non coding genes5
Pseudogenes56
Gene transcripts74,296

Other

Short Variants26,022,125