Three-spined sticklebacki - Freshwater BOT (BOT)

Three-spined sticklebacki - Freshwater BOT assembly and gene annotation

Assembly

The BOT assembly was submitted by Institute of Ecology and Evolution and last updated on 2019-06-11. The assembly is on the scaffold level, consisting of 37160 contigs assembled into 18433 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 32541 while the scaffold N50 is 312209.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyBOT, INSDC Assembly GCA_006229185.1, Jun 2019
Base Pairs427,295,814
Golden Path Length427,295,814
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedOct 2020
Genebuild releasedJan 2021
Genebuild last updated/patchedOct 2020
Database version116.1

Gene counts

Coding genes20,658
Non coding genes619
Small non coding genes277
Long non coding genes339
Misc non coding genes3
Pseudogenes267
Gene transcripts54,825

Other

Genscan gene predictions37,843