Three-spined sticklebacki - Marine BAM assembly and gene annotation

Name: Ensembl Three-spined sticklebacki - Marine BAM Gene Set
Creator: Ensembl
License: https://www.apache.org/licenses/LICENSE-2.0
Keywords: genebuild, transcripts, transcription, alignment, loci

Assembly

Gene annotation

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

Assembly	BAM, INSDC Assembly GCA_006232265.1, Jun 2019
Base Pairs	445,644,378
Golden Path Length	445,644,378
Annotation provider	Ensembl
Annotation method	Full genebuild
Genebuild started	Oct 2020
Genebuild released	Jan 2021
Genebuild last updated/patched	Oct 2020
Database version	115.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,695
Non coding genes	705
Small non coding genes	251
Long non coding genes	452
Misc non coding genes	2
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	414
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	51,407

Other

Genscan gene predictions

41,564

Three-spined sticklebacki - Marine BAM assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

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Three-spined sticklebacki - Marine BAM assembly and gene annotation

Assembly

Gene annotation

More information

Statistics

Summary

Gene counts

Other

About Us

Get help

Our sister sites

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