Three-spined sticklebacki - Marine SYL (SYL)

Three-spined sticklebacki - Marine SYL assembly and gene annotation

Assembly

The SYL assembly was submitted by Institute of Ecology and Evolution and last updated on 2019-06-11. The assembly is on the scaffold level, consisting of 35293 contigs assembled into 15853 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 32252 while the scaffold N50 is 401650.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblySYL, INSDC Assembly GCA_006232285.1, Jun 2019
Base Pairs431,811,987
Golden Path Length431,811,987
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedOct 2020
Genebuild releasedJan 2021
Genebuild last updated/patchedOct 2020
Database version116.1

Gene counts

Coding genes20,778
Non coding genes602
Small non coding genes269
Long non coding genes329
Misc non coding genes4
Pseudogenes223
Gene transcripts56,505

Other

Genscan gene predictions36,730