Rat - SHRSP/BbbUtx (UTH_Rnor_SHRSP_BbbUtx_1.0)

Rat - SHRSP/BbbUtx assembly and gene annotation

Assembly

The UTH_Rnor_SHRSP_BbbUtx_1.0 assembly was submitted by Inbred Rat Genome Sequencing Project (UTH/UK/UofL) and last updated on 2025-11-26. The assembly is on the chromosome level, consisting of 4344 contigs assembled into 2734 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 50481003 while the scaffold N50 is 138881597.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyUTH_Rnor_SHRSP_BbbUtx_1.0, INSDC Assembly GCA_021556685.1, Jan 2022
Base Pairs2,907,517,304
Golden Path Length2,907,517,304
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedOct 2022
Genebuild releasedJan 2023
Genebuild last updated/patchedJan 2023
Database version116.1

Gene counts

Coding genes24,763
Non coding genes7,134
Small non coding genes4,944
Long non coding genes2,161
Misc non coding genes29
Pseudogenes1,542
Gene transcripts57,952