Atlantic salmon - European origin ALTA (Ssal_ALTA)

Atlantic salmon - European origin ALTA assembly and gene annotation

Assembly

The Ssal_ALTA assembly was submitted by NORWEGIAN UNIVERSITY OF LIFE SCIENCES and last updated on 2022-05-12. The assembly is on the chromosome level, consisting of 4067 contigs assembled into 4042 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 19218354 while the scaffold N50 is 19218354.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblySsal_ALTA, INSDC Assembly GCA_931346935.2, May 2022
Base Pairs2,621,787,693
Golden Path Length2,621,787,693
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedJun 2022
Genebuild releasedOct 2023
Genebuild last updated/patchedOct 2022
Database version116.2

Gene counts

Coding genes42,434
Non coding genes2,495
Small non coding genes2,388
Long non coding genes40
Misc non coding genes67
Pseudogenes850
Gene transcripts73,501