Pig - PB115 (CAU-K)

Pig - PB115 assembly and gene annotation

Assembly

The CAU-K assembly was submitted by China Agricultural University and last updated on 2021-07-20. The assembly is on the scaffold level, consisting of 34590 contigs assembled into 13384 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 223517 while the scaffold N50 is 30528819.

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyCAU-K, INSDC Assembly GCA_019290145.1, Jul 2021
Base Pairs2,444,985,074
Golden Path Length2,444,985,074
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedJan 2023
Genebuild released
Genebuild last updated/patchedAug 2023
Database version116.1

Gene counts

Coding genes22,103
Non coding genes17,606
Small non coding genes1,929
Long non coding genes15,661
Misc non coding genes16
Pseudogenes951
Gene transcripts77,748