Ensembl Home
More ▼
Search »
Mouse (GRCm39) ▼

Favourite species

All species

Search Mouse (Mus musculus)

View karyotype Example region

Genome assembly: GRCm39 (GCA_000001635.9)

More information and statistics

Download DNA sequence (FASTA)

Convert your data to GRCm39 coordinates

Display your data in Ensembl

Other reference assemblies

Other strains

This species has data on 15 additional strains. View list of strains

Example gene Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download FASTA files for genes, cDNAs, ncRNA, proteins

Download GTF or GFF3 files for genes, cDNAs, ncRNA, proteins

Update your old Ensembl IDs

Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analysis

Download alignments (EMF)

Example variant Example phenotype Example structural variant

Variation

What can I find? Short sequence variants and longer structural variants; disease and other phenotypes

More about variation in Ensembl

Download all variants (GVF)

Variant Effect Predictor

Example regulatory feature

Regulation

What can I find? Regulatory features like enhancers and promoters, and regulatory activity including ATAC-seq and ChIP-seq tracks.

More about the Ensembl regulatory annotation

Experimental data sources

Download all regulatory features (GFF)