Ensembl Variation - Detailed species data count

List of data counts by category and species - Ensembl 113

Structural variant data

There are currently 10 species with structural variant data in the Ensembl Variation databases:

Species	Structural variant	(e!112 → e!113)	Supporting evidence	(e!112 → e!113)
Cow Bos taurus	18 K	-	529 K	-
Dog Canis lupus familiaris	104 K	-	107 K	-
Dog - Boxer Canis lupus familiarisboxer	104 K	-	107 K	-
Horse Equus caballus	193 K	-	193 K	-
Human Homo sapiens	6.8 M	-	26 M	-
Mouse Mus musculus	791 K	-	1.2 M	-
Pig Sus scrofa	224 K	-	310 K	-
Sheep Ovis aries rambouillet	2	-	2	-
Sheep - Texel Ovis aries	2	-	2	-
Zebrafish Danio rerio	5 K	-	29 K	-

Genotype data

There are currently 2 species with genotype data in the Ensembl Variation databases:

Species	Variants with sample genotype	(e!112 → e!113)	Variants with population genotype	(e!112 → e!113)
Platypus Ornithorhynchus anatinus	1.1 M	-	1.1 M	-
Sheep - Texel Ovis aries	64	-	147	-

There are currently 10 species with genotype data loaded dynamically from vcf file:

Species	Variants with sample genotype	(e!112 → e!113)	Variants with population genotype	(e!112 → e!113)
Atlantic salmon Salmo salar	8 M	-	8 M	-
Chicken Gallus gallus	14 M	-	14 M	-
Cow Bos taurus	18 M	-	18 M	-
Great Tit Parus major	497 K	-	497 K	-
Human Homo sapiens	27 M	-	27 M	-
Mouse Mus musculus	10 M	-	10 M	-
Rabbit Oryctolagus cuniculus	82 K	-	82 K	-
Sheep Ovis aries rambouillet	34 M	-	34 M	-
Sheep - Texel Ovis aries	38 M	-	38 M	-
Vervet-AGM Chlorocebus sabaeus	62 M	-	62 M	-

Phenotype data

The list of phenotype/disease/trait association sources by species is available in the page Phenotype sources.

There are currently 14 species with phenotype data in the Ensembl Variation databases:

Species	Phenotype	(e!112 → e!113)	Phenotype association	(e!112 → e!113)
Cat Felis catus	105	(+5)	106	(+6)
Chicken Gallus gallus	254	(+4)	14 K	(+617)
Cow Bos taurus	697	(-2)	163 K	(-1,000)
Dog Canis lupus familiaris	341	(+10)	348	(+14)
Dog - Boxer Canis lupus familiarisboxer	341	(+9)	348	(+8)
Goat Capra hircus	77	(+43)	1 K	(+1,000)
Horse Equus caballus	101	(+4)	2 K	(+45)
Human Homo sapiens	62 K	(+11,000)	19 M	(+1 million)
Mouse Mus musculus	10 K	(+211)	250 K	(+10,000)
Pig Sus scrofa	447	(+2)	43 K	(+2,000)
Rat Rattus norvegicus	12 K	(+311)	134 K	(-8,000)
Sheep Ovis aries rambouillet	168	(+1)	3 K	(+576)
Sheep - Texel Ovis aries	84	(-77)	198	(-2,000)
Zebrafish Danio rerio	25 K	(+623)	88 K	(+2,000)

Citation data

There are currently 13 species with citation data in the Ensembl Variation databases:

Species	Cited sequence variant	(e!112 → e!113)	Publication	(e!112 → e!113)
Chicken Gallus gallus	742	-	113	-
Cow Bos taurus	2 K	-	226	-
Dog Canis lupus familiaris	310	-	76	-
Dog - Boxer Canis lupus familiarisboxer	304	-	75	-
Goat Capra hircus	13	-	2	-
Horse Equus caballus	35	-	8	-
Human Homo sapiens	861 K	(+63,000)	248 K	(+13,000)
Mouse Mus musculus	8 K	-	790	-
Pig Sus scrofa	355	-	45	-
Rat Rattus norvegicus	90	-	19	-
Sheep Ovis aries rambouillet	65	(-12)	17	-
Sheep - Texel Ovis aries	77	-	17	-
Zebrafish Danio rerio	30	-	6	-

Prediction data

There are currently 14 species with prediction data in the Ensembl Variation databases:

Species	Variants with SIFT data	(e!112 → e!113)	Variants with PolyPhen data	(e!112 → e!113)
Cat Felis catus	7 K	-	0	-
Chicken Gallus gallus	294 K	-	0	-
Cow Bos taurus	2.2 M	-	0	-
Dog Canis lupus familiaris	168 K	-	0	-
Dog - Boxer Canis lupus familiarisboxer	162 K	-	0	-
Goat Capra hircus	114 K	-	0	-
Horse Equus caballus	351 K	-	0	-
Human Homo sapiens	9.6 M	(-725,000)	9.3 M	(-805,000)
Mouse Mus musculus	631 K	(+1,000)	0	-
Pig Sus scrofa	268 K	(-871)	0	-
Rat Rattus norvegicus	33 K	-	0	-
Sheep Ovis aries rambouillet	432 K	(+224,000)	0	-
Sheep - Texel Ovis aries	235 K	-	0	-
Zebrafish Danio rerio	90 K	-	0	-

The full list of species with their assembly versions in Ensembl is available here.