Vervet-AGM vs Human Synteny results
The syntenic regions between Vervet-AGM (Chlorocebus sabaeus, ChlSab1.1) and Human (Homo sapiens, GRCh38) were extracted from their pairwise alignment in Ensembl release 77. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 238 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Vervet-AGM |
Uncovered: 72,556,691 out of 2,789,656,328 |
Uncovered: 317,413 out of 31,292,716 |
| Human |
Uncovered: 300,681,675 out of 3,099,750,718 |
Uncovered: 519,179 out of 38,571,754 |