Human vs Mexican tetra Synteny results
The syntenic regions between Human (Homo sapiens, GRCh38) and Mexican tetra (Astyanax mexicanus, Astyanax_mexicanus-2.0) were extracted from their pairwise alignment in Ensembl release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 270 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Human |
Uncovered: 2,944,661,207 out of 3,096,649,726 |
Uncovered: 34,269,760 out of 35,610,692 |
| Mexican tetra |
Uncovered: 1,255,300,379 out of 1,335,239,194 |
Uncovered: 41,075,710 out of 42,605,471 |