Orange clownfish vs Japanese medaka HdrR Synteny results
The syntenic regions between Orange clownfish (Amphiprion percula, Nemo_v1) and Japanese medaka HdrR (Oryzias latipes, ASM223467v1) were extracted from their pairwise alignment in Ensembl release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 424 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Orange clownfish |
Uncovered: 105,926,771 out of 908,939,294 |
Uncovered: 3,335,142 out of 38,226,868 |
| Japanese medaka HdrR |
Uncovered: 66,714,900 out of 734,057,086 |
Uncovered: 3,718,180 out of 40,334,262 |