Pig vs Pig USMARC Synteny results
The syntenic regions between Pig (Sus scrofa, Sscrofa11.1) and Pig USMARC (Sus scrofa, USMARCv1.0) were extracted from their pairwise alignment in Ensembl release 97. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 233 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Pig |
Uncovered: 185,214,641 out of 2,501,912,388 |
Uncovered: 2,319,139 out of 35,828,571 |
| Pig USMARC |
Uncovered: 447,452,591 out of 2,755,438,035 |
Uncovered: 3,311,243 out of 35,166,034 |