Channel bull blenny vs Japanese medaka HdrR Synteny results
The syntenic regions between Channel bull blenny (Cottoperca gobio, fCotGob3.1) and Japanese medaka HdrR (Oryzias latipes, ASM223467v1) were extracted from their pairwise alignment in Ensembl release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 306 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Channel bull blenny |
Uncovered: 57,482,929 out of 609,391,784 |
Uncovered: 2,860,502 out of 37,075,790 |
| Japanese medaka HdrR |
Uncovered: 77,993,253 out of 734,057,086 |
Uncovered: 4,327,287 out of 40,334,262 |