Zebrafish vs Nile tilapia Synteny results
The syntenic regions between Zebrafish (Danio rerio, GRCz11) and Nile tilapia (Oreochromis niloticus, O_niloticus_UMD_NMBU) were extracted from their pairwise alignment in Ensembl release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 575 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Zebrafish |
Uncovered: 958,917,681 out of 1,373,471,384 |
Uncovered: 32,412,052 out of 42,031,845 |
| Nile tilapia |
Uncovered: 713,487,518 out of 1,005,681,550 |
Uncovered: 38,035,183 out of 51,713,280 |