Japanese medaka HdrR vs Brown trout Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Brown trout (Salmo trutta, fSalTru1.1) were extracted from their pairwise alignment in Ensembl release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 467 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 456,512,569 out of 734,057,086 |
Uncovered: 22,895,117 out of 40,334,262 |
| Brown trout |
Uncovered: 1,974,783,426 out of 2,371,880,186 |
Uncovered: 62,086,098 out of 79,685,618 |