Mouse vs Prairie vole Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Prairie vole (Microtus ochrogaster, MicOch1.0) were extracted from their pairwise alignment in Ensembl release 103. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 444 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 280,751,672 out of 2,728,222,451 |
Uncovered: 1,550,884 out of 36,555,494 |
| Prairie vole |
Uncovered: 87,015,953 out of 2,287,357,235 |
Uncovered: 317,439 out of 30,375,214 |