Mouse vs Rat Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Rat (Rattus norvegicus, mRatBN7.2) were extracted from their pairwise alignment in Ensembl release 105. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 246 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 205,452,294 out of 2,728,222,451 |
Uncovered: 575,349 out of 36,539,344 |
| Rat |
Uncovered: 88,299,186 out of 2,647,915,728 |
Uncovered: 452,269 out of 37,397,693 |