Chicken vs Japanese quail Synteny results
The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Japanese quail (Coturnix japonica, Coturnix_japonica_2.0) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 85 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
Uncovered: 52,941,195 out of 1,053,332,251 |
Uncovered: 1,613,030 out of 31,304,036 |
| Japanese quail |
Uncovered: 27,916,359 out of 927,656,957 |
Uncovered: 771,717 out of 27,520,960 |