Chicken vs Kakapo Synteny results
The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Kakapo (Strigops habroptila, bStrHab1_v1.p) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 204 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
Uncovered: 58,663,856 out of 1,053,332,251 |
Uncovered: 2,015,354 out of 31,304,036 |
| Kakapo |
Uncovered: 71,926,571 out of 1,165,621,973 |
Uncovered: 1,449,066 out of 26,948,573 |