Chicken vs Goodes thornscrub tortoise Synteny results
The syntenic regions between Chicken (Gallus gallus, bGalGal1.mat.broiler.GRCg7b) and Goodes thornscrub tortoise (Gopherus evgoodei, rGopEvg1_v1.p) were extracted from their pairwise alignment in Ensembl release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 230 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Chicken |
Uncovered: 67,724,744 out of 1,053,332,251 |
Uncovered: 3,028,437 out of 31,304,036 |
| Goodes thornscrub tortoise |
Uncovered: 262,623,686 out of 2,298,547,364 |
Uncovered: 5,351,278 out of 31,217,359 |