Cow vs Yarkand deer Synteny results
The syntenic regions between Cow (Bos taurus, ARS-UCD1.3) and Yarkand deer (Cervus hanglu yarkandensis, CEY_v1) were extracted from their pairwise alignment in Ensembl release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 132 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Cow |
Uncovered: 103,827,658 out of 2,711,209,831 |
Uncovered: 469,207 out of 37,648,360 |
| Yarkand deer |
Uncovered: 123,472,928 out of 2,594,114,534 |
Uncovered: 1,460,486 out of 35,871,670 |