Mouse vs Chinese hamster PICR Synteny results
The syntenic regions between Mouse (Mus musculus, GRCm39) and Chinese hamster PICR (Cricetulus griseus, CriGri-PICRH-1.0) were extracted from their pairwise alignment in Ensembl release 115. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 191 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Mouse |
Uncovered: 158,702,094 out of 2,728,222,451 |
Uncovered: 1,048,668 out of 36,945,812 |
| Chinese hamster PICR |
Uncovered: 110,560,634 out of 2,366,634,374 |
Uncovered: 1,323,404 out of 37,747,936 |