Pig vs Pig - Chenghua Synteny results
The syntenic regions between Pig (Sus scrofa, Sscrofa11.1) and Pig - Chenghua (Sus scrofa, ASM3744751v1) were extracted from their pairwise alignment in Ensembl release 116. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 60 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Pig |
Uncovered: 96,077,445 out of 2,501,912,388 |
Uncovered: 1,307,395 out of 35,448,596 |
| Pig - Chenghua |
Uncovered: 284,916,840 out of 2,714,138,220 |
Uncovered: 667,640 out of 34,227,502 |