10 primates EPO

This alignment has been generated in Ensembl release 106 and is composed of 22,183 blocks (up to 910,598 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "EPO" and the species_set_name "primates".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Human (Homo sapiens)GRCh383,096,649,7262,785,117,58689.9435,725,19734,808,92697.44
Chimpanzee (Pan troglodytes)Pan_tro_3.03,231,170,6662,892,723,38389.5337,531,68136,159,80596.34
Bonobo (Pan paniscus)panpan1.13,286,643,8962,704,881,77982.3033,835,52532,995,27297.52
Gorilla (Gorilla gorilla gorilla)gorGor43,063,362,7942,734,714,45089.2734,567,33033,055,79595.63
Sumatran orangutan (Pongo abelii)Susie_PABv23,065,052,2152,759,783,97190.0434,106,54532,968,88696.66
Gibbon (Nomascus leucogenys)Nleu_3.02,962,060,1792,668,911,09690.1033,058,74931,341,14594.80
Vervet-AGM (Chlorocebus sabaeus)ChlSab1.12,789,656,3282,657,352,72395.2631,292,71630,212,01796.55
Crab-eating macaque (Macaca fascicularis)Macaca_fascicularis_6.02,906,155,1322,739,270,15494.2634,070,03633,131,16897.24
Macaque (Macaca mulatta)Mmul_102,971,331,5302,758,791,30892.8537,308,54536,436,53097.66
Mouse Lemur (Microcebus murinus)Mmur_3.02,487,409,1382,243,302,27490.1932,222,96330,231,89493.82

Block size distribution

Size range All 22,183 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
1
90.0 bp
100 bp - 1 kb
109
59.7 kb
1 kb - 10 kb
885
4.9 Mb
10 kb - 100 kb
12,275
527.9 Mb
100 kb - 1 Mb
6,539
2.2 Gb
1 Mb - 10 Mb
2,374
2.4 Gb