24 primates EPO-Extended

This alignment has been generated in Ensembl release 110 and is composed of 22,183 blocks (up to 910,598 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "EPO_EXTENDED" and the species_set_name "primates".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Human (Homo sapiens)GRCh383,099,750,7182,786,882,38489.9135,868,01934,930,49497.39
Chimpanzee (Pan troglodytes)Pan_tro_3.03,231,170,6662,892,723,38389.5337,531,68136,159,80596.34
Bonobo (Pan paniscus)panpan1.13,286,643,8962,704,881,77982.3033,835,52532,995,27297.52
Gorilla (Gorilla gorilla gorilla)gorGor43,063,362,7942,734,714,45089.2734,567,33033,055,79595.63
Sumatran orangutan (Pongo abelii)Susie_PABv23,065,052,2152,759,783,97190.0434,106,54532,968,88696.66
Gibbon (Nomascus leucogenys)Nleu_3.02,962,060,1792,668,911,09690.1033,058,74931,341,14594.80
Black snub-nosed monkey (Rhinopithecus bieti)ASM169854v12,977,074,9462,407,892,47480.8832,924,30131,489,67295.64
Golden snub-nosed monkey (Rhinopithecus roxellana)Rrox_v12,899,552,1392,418,892,61883.4233,867,87532,380,95795.61
Vervet-AGM (Chlorocebus sabaeus)ChlSab1.12,789,656,3282,657,352,72395.2631,292,71630,212,01796.55
Olive baboon (Papio anubis)Panubis1.02,869,821,1632,425,695,53384.5236,172,91732,596,96190.11
Drill (Mandrillus leucophaeus)Mleu.le_1.03,062,009,3872,443,367,97779.8032,678,72631,288,51295.75
Sooty mangabey (Cercocebus atys)Caty_1.02,848,246,3562,419,164,86484.9434,351,13433,079,02996.30
Pig-tailed macaque (Macaca nemestrina)Mnem_1.02,948,703,5112,431,472,32982.4634,342,62533,080,57796.33
Crab-eating macaque (Macaca fascicularis)Macaca_fascicularis_6.02,906,155,1322,739,270,15494.2634,070,03633,131,16897.24
Macaque (Macaca mulatta)Mmul_102,971,331,5302,758,791,30892.8537,308,54536,436,53097.66
Bolivian squirrel monkey (Saimiri boliviensis boliviensis)SaiBol1.02,608,588,5372,088,012,21480.0432,349,18830,986,17495.79
Panamanian white-faced capuchin (Cebus imitator)Cebus_imitator-1.02,717,703,1822,190,699,29480.6133,329,72231,524,26494.58
White-tufted-ear marmoset (Callithrix jacchus)mCalJac1.pat.X2,829,711,1982,177,647,24376.9636,931,35632,977,81989.29
Ma's night monkey (Aotus nancymaae)Anan_2.02,861,668,3482,080,604,52272.7133,534,09931,408,19993.66
Tarsier (Carlito syrichta)Tarsius_syrichta-2.0.13,453,864,7741,758,644,37950.9228,501,27027,276,48795.70
Bushbaby (Otolemur garnettii)OtoGar32,519,404,4931,451,626,52557.6231,659,61829,758,30093.99
Greater bamboo lemur (Prolemur simus)Prosim_1.02,411,593,6761,646,009,50068.2532,178,25330,807,65695.74
Coquerel's sifaka (Propithecus coquereli)Pcoq_1.02,798,152,1411,573,020,44056.2229,815,60028,984,53397.21
Mouse Lemur (Microcebus murinus)Mmur_3.02,487,409,1382,243,302,27490.1932,222,96330,231,89493.82

Block size distribution

Size range All 22,183 alignment blocks
# blocks Total size (incl. gaps)
10 bp - 100 bp
1
90.0 bp
100 bp - 1 kb
109
59.7 kb
1 kb - 10 kb
885
4.9 Mb
10 kb - 100 kb
12,275
527.9 Mb
100 kb - 1 Mb
6,539
2.2 Gb
1 Mb - 10 Mb
2,374
2.4 Gb