63 amniota vertebrates Mercator-Pecan

This alignment has been generated in Ensembl release 111 and is composed of 31,418 blocks (up to 1,000,000 bp long).

API access

This alignment set can be accessed using the Compara API via the Bio::EnsEMBL::DBSQL::MethodLinkSpeciesSetAdaptor using the method_link_type "PECAN" and the species_set_name "amniotes".

SpeciesAssemblyGenome length (bp)Genome coverage (bp)Genome coverage (%)Coding exon length (bp)Coding exon coverage (bp)Coding exon coverage (%)
Human (Homo sapiens)GRCh383,099,750,7181,957,265,15763.1435,869,22331,908,29788.96
Chimpanzee (Pan troglodytes)Pan_tro_3.03,231,170,6661,948,085,22860.2937,531,68131,055,86782.75
Bonobo (Pan paniscus)panpan1.13,286,643,8961,903,025,03957.9033,835,52530,261,06689.44
Gorilla (Gorilla gorilla gorilla)gorGor43,063,362,7941,867,360,28560.9634,567,33029,474,51585.27
Sumatran orangutan (Pongo abelii)Susie_PABv23,065,052,2151,895,240,86761.8334,106,54529,391,31186.17
Gibbon (Nomascus leucogenys)Nleu_3.02,962,060,1791,691,422,32557.1033,058,74927,052,24481.83
Olive baboon (Papio anubis)Panubis1.02,869,821,1631,942,785,43967.7036,172,91731,144,71886.10
Crab-eating macaque (Macaca fascicularis)Macaca_fascicularis_6.02,906,155,1322,007,893,39969.0934,070,03630,262,66988.82
Macaque (Macaca mulatta)Mmul_102,971,331,5301,953,774,51965.7537,308,54532,090,50386.01
Vervet-AGM (Chlorocebus sabaeus)ChlSab1.12,789,656,3281,787,578,78764.0831,292,71627,332,84087.35
White-tufted-ear marmoset (Callithrix jacchus)mCalJac1.pat.X2,829,711,1981,427,383,67550.4436,931,35625,865,24070.04
Mouse Lemur (Microcebus murinus)Mmur_3.02,487,409,1381,184,578,80447.6232,222,96322,794,08570.74
Mouse (Mus musculus)GRCm392,728,222,4511,913,810,78470.1536,812,97332,834,23889.19
Algerian mouse (Mus spretus)SPRET_EiJ_v12,625,571,1691,917,151,36073.0233,001,57030,119,37591.27
Ryukyu mouse (Mus caroli)CAROLI_EIJ_v1.12,553,112,5871,666,735,70265.2832,770,13329,019,88488.56
Shrew mouse (Mus pahari)PAHARI_EIJ_v1.12,475,012,9511,519,273,27161.3832,578,44427,664,02484.92
Rat (Rattus norvegicus)mRatBN7.22,647,915,7281,599,985,38560.4237,400,80729,662,78979.31
Northern American deer mouse (Peromyscus maniculatus bairdii)HU_Pman_2.12,512,423,4401,567,165,45862.3833,606,40728,087,04283.58
Chinese hamster CHOK1GS (Cricetulus griseus)CHOK1GS_HDv12,358,167,3901,450,022,16461.4933,368,01028,270,16284.72
Prairie vole (Microtus ochrogaster)MicOch1.02,287,357,2351,424,785,34562.2930,375,21425,773,30984.85
Guinea Pig (Cavia porcellus)Cavpor3.02,723,219,6411,016,882,25837.3429,816,15318,805,40163.07
Alpine marmot (Marmota marmota marmota)marMar2.12,510,587,3791,544,950,99161.5431,034,71626,524,11385.47
Eurasian red squirrel (Sciurus vulgaris)mSciVul1.12,878,591,0321,665,745,47657.8733,947,06427,995,75182.47
Rabbit (Oryctolagus cuniculus)OryCun2.02,737,490,5011,111,666,20440.6134,042,18720,211,58359.37
Horse (Equus caballus)EquCab3.02,506,966,1351,156,571,63646.1338,317,51625,020,24665.30
Dingo (Canis lupus dingo)ASM325472v12,439,831,5071,678,355,32168.7933,093,72329,464,29989.03
Dog (Canis lupus familiaris)ROS_Cfam_1.02,396,858,2951,775,210,59474.0635,281,46331,866,43790.32
Cat (Felis catus)Felis_catus_9.02,521,863,8451,630,102,09164.6434,484,70529,283,86684.92
Leopard (Panthera pardus)PanPar1.02,578,019,2071,827,566,67670.8930,973,21227,986,57590.36
Lion (Panthera leo)PanLeo1.02,406,807,6191,722,707,93071.5832,345,48229,055,90889.83
Blue whale (Balaenoptera musculus)mBalMus1.v22,379,995,9811,551,852,39465.2031,093,31526,253,97884.44
Beluga whale (Delphinapterus leucas)ASM228892v32,362,774,6591,687,302,10871.4131,519,47128,438,82790.23
Narwhal (Monodon monoceros)NGI_Narwhal_12,355,574,9791,716,074,98072.8531,508,91928,292,99489.79
Vaquita (Phocoena sinus)mPhoSin1.pri2,371,524,1541,668,950,93670.3731,056,20127,219,28987.65
Sperm whale (Physeter catodon)ASM283717v22,512,132,9741,528,452,50460.8430,899,79024,667,26179.83
Goat (Capra hircus)ARS12,922,813,2461,769,804,52060.5533,933,51529,307,95886.37
Domestic yak (Bos grunniens)LU_Bosgru_v3.02,832,776,3951,980,358,17169.9134,628,78630,043,81886.76
Hybrid - Bos Indicus (Bos indicus x Bos taurus)UOA_Brahman_12,680,953,0561,887,375,96770.4037,484,80732,514,09386.74
Yarkand deer (Cervus hanglu yarkandensis)CEY_v12,594,114,5341,414,995,64754.5535,871,67026,221,91673.10
Pig (Sus scrofa)Sscrofa11.12,501,912,3881,735,476,92969.3735,419,72730,693,31486.66
Chacoan peccary (Catagonus wagneri)CatWag_v2_BIUU_UCD2,640,067,8141,519,042,70157.5431,494,02026,691,72284.75
Arabian camel (Camelus dromedarius)CamDro22,154,386,9591,063,181,09849.3532,075,92723,315,05972.69
Greater horseshoe bat (Rhinolophus ferrumequinum)mRhiFer1_v1.p2,075,768,5621,047,087,82150.4432,593,49522,778,95369.89
Elephant (Loxodonta africana)loxAfr33,196,760,8331,398,741,81543.7531,407,75419,888,51163.32
Opossum (Monodelphis domestica)ASM229v13,600,504,7281,333,451,58337.0435,083,22316,910,42748.20
Platypus (Ornithorhynchus anatinus)mOrnAna1.p.v11,858,552,590747,340,57640.2131,202,08516,148,33151.75
Three-toed box turtle (Terrapene carolina triunguis)T_m_triunguis-2.02,571,267,2491,599,369,29762.2033,075,40225,633,88077.50
Goodes thornscrub tortoise (Gopherus evgoodei)rGopEvg1_v1.p2,298,547,3641,662,940,70972.3531,217,35926,341,80084.38
Australian saltwater crocodile (Crocodylus porosus)CroPor_comp12,049,536,2521,096,629,88053.5126,208,35917,780,34567.84
Kakapo (Strigops habroptila)bStrHab1_v1.p1,165,621,973764,943,50365.6326,948,57322,282,73682.69
Golden eagle (Aquila chrysaetos chrysaetos)bAquChr1.21,203,454,851857,385,39871.2427,504,04523,830,23986.64
Great Tit (Parus major)Parus_major1.11,020,310,768748,454,91873.3626,914,28423,754,96788.26
Zebra finch (Taeniopygia guttata)bTaeGut1_v1.p1,057,995,280705,310,84266.6630,887,95724,406,47279.02
Common canary (Serinus canaria)SCA11,152,083,301721,211,04762.6025,036,60221,810,84687.12
Japanese quail (Coturnix japonica)Coturnix_japonica_2.0927,656,957631,096,22968.0327,520,96023,145,19984.10
Chicken (Gallus gallus)bGalGal1.mat.broiler.GRCg7b1,053,332,251719,085,27968.2731,304,03626,117,37183.43
Turkey (Meleagris gallopavo)Turkey_5.11,115,474,681430,072,22538.5624,743,66318,544,28774.95
Duck (Anas platyrhynchos platyrhynchos)CAU_duck1.01,136,415,614679,701,36459.8126,875,23719,824,73473.77
Indian cobra (Naja naja)Nana_v51,768,535,0921,236,013,12869.8927,810,54324,178,40386.94
Eastern brown snake (Pseudonaja textilis)EBS10Xv2-PRI1,590,035,0731,104,324,52769.4528,191,27124,246,77586.01
Green anole (Anolis carolinensis)AnoCar2.0v21,799,143,5871,107,816,13261.5737,303,06128,900,54177.47
Argentine black and white tegu (Salvator merianae)HLtupMer32,026,218,8271,267,654,19962.5632,145,53026,123,91581.27
Common wall lizard (Podarcis muralis)PodMur_1.01,511,002,858966,621,49663.9737,562,06929,344,09278.12

Block size distribution

Size range All 31,418 alignment blocks
# blocks Total size (incl. gaps)
100 bp - 1 kb
198
137.9 kb
1 kb - 10 kb
1,274
5.7 Mb
10 kb - 100 kb
2,330
102.3 Mb
100 kb - 1 Mb
21,384
17.8 Gb
1 Mb - 10 Mb
6,232
6.2 Gb