Human vs Ryukyu mouse Synteny results
The syntenic regions between Human (Homo sapiens, GRCh38) and Ryukyu mouse (Mus caroli, CAROLI_EIJ_v1.1) were extracted from their pairwise alignment in Ensembl release 90. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 354 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Human |
Uncovered: 383,267,689 out of 3,096,649,726 |
Uncovered: 1,384,580 out of 35,628,222 |
| Ryukyu mouse |
Uncovered: 193,585,085 out of 2,553,112,587 |
Uncovered: 714,397 out of 32,770,133 |