Zebrafish vs Spotted gar Synteny results
The syntenic regions between Zebrafish (Danio rerio, GRCz11) and Spotted gar (Lepisosteus oculatus, LepOcu1) were extracted from their pairwise alignment in Ensembl release 92. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 1,110 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Zebrafish |
Uncovered: 676,165,758 out of 1,373,471,384 |
Uncovered: 25,131,389 out of 42,031,845 |
| Spotted gar |
Uncovered: 379,220,900 out of 945,878,036 |
Uncovered: 13,075,964 out of 31,448,193 |