Orange clownfish vs Zebrafish Synteny results
The syntenic regions between Orange clownfish (Amphiprion percula, Nemo_v1) and Zebrafish (Danio rerio, GRCz11) were extracted from their pairwise alignment in Ensembl release 94. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 581 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Orange clownfish |
Uncovered: 625,103,340 out of 908,939,294 |
Uncovered: 28,762,798 out of 38,226,868 |
| Zebrafish |
Uncovered: 943,452,572 out of 1,373,471,384 |
Uncovered: 31,158,896 out of 42,031,845 |