Japanese quail vs Human Synteny results
The syntenic regions between Japanese quail (Coturnix japonica, Coturnix_japonica_2.0) and Human (Homo sapiens, GRCh38) were extracted from their pairwise alignment in Ensembl release 96. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 398 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese quail |
Uncovered: 188,089,797 out of 927,656,957 |
Uncovered: 7,200,754 out of 27,520,960 |
| Human |
Uncovered: 1,132,980,255 out of 3,096,649,726 |
Uncovered: 14,531,282 out of 35,628,222 |