Reedfish vs Human Synteny results
The syntenic regions between Reedfish (Erpetoichthys calabaricus, fErpCal1.1) and Human (Homo sapiens, GRCh38) were extracted from their pairwise alignment in Ensembl release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 882 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Reedfish |
Uncovered: 2,620,446,025 out of 3,811,022,027 |
Uncovered: 24,512,799 out of 35,314,704 |
| Human |
Uncovered: 1,938,113,962 out of 3,096,649,726 |
Uncovered: 23,518,275 out of 35,628,222 |