Zebrafish vs Reedfish Synteny results
The syntenic regions between Zebrafish (Danio rerio, GRCz11) and Reedfish (Erpetoichthys calabaricus, fErpCal1.1) were extracted from their pairwise alignment in Ensembl release 98. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 720 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Zebrafish |
Uncovered: 1,125,261,554 out of 1,373,471,384 |
Uncovered: 36,539,784 out of 42,031,845 |
| Reedfish |
Uncovered: 3,268,152,040 out of 3,811,022,027 |
Uncovered: 29,850,817 out of 35,314,704 |