Japanese medaka HdrR vs Gilthead seabream Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Gilthead seabream (Sparus aurata, fSpaAur1.1) were extracted from their pairwise alignment in Ensembl release 99. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 308 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 69,436,388 out of 734,057,086 |
Uncovered: 3,553,334 out of 40,334,262 |
| Gilthead seabream |
Uncovered: 139,804,284 out of 833,578,411 |
Uncovered: 5,427,005 out of 46,093,722 |