Zebrafish vs Javanese ricefish Synteny results
The syntenic regions between Zebrafish (Danio rerio, GRCz11) and Javanese ricefish (Oryzias javanicus, OJAV_1.1) were extracted from their pairwise alignment in Ensembl release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 634 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Zebrafish |
Uncovered: 957,283,330 out of 1,373,471,384 |
Uncovered: 32,329,776 out of 42,031,845 |
| Javanese ricefish |
Uncovered: 498,145,701 out of 809,679,899 |
Uncovered: 24,169,319 out of 34,799,773 |