Japanese medaka HdrR vs Javanese ricefish Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Javanese ricefish (Oryzias javanicus, OJAV_1.1) were extracted from their pairwise alignment in Ensembl release 100. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 168 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 30,314,602 out of 734,057,086 |
Uncovered: 1,532,673 out of 40,334,262 |
| Javanese ricefish |
Uncovered: 41,580,215 out of 809,679,899 |
Uncovered: 1,487,533 out of 34,799,773 |