Japanese medaka HdrR vs Lumpfish Synteny results
The syntenic regions between Japanese medaka HdrR (Oryzias latipes, ASM223467v1) and Lumpfish (Cyclopterus lumpus, fCycLum1.pri) were extracted from their pairwise alignment in Ensembl release 101. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.
Configuration parameters
No configuration parameters are available.
Statistics over 312 synteny blocks
| Genome coverage (bp) | Coding exon coverage (bp) | |
|---|---|---|
| Japanese medaka HdrR |
Uncovered: 84,421,069 out of 734,057,086 |
Uncovered: 4,749,446 out of 40,334,262 |
| Lumpfish |
Uncovered: 57,692,795 out of 572,885,595 |
Uncovered: 3,327,715 out of 36,193,391 |